The Ribalet Lab - SeaFlow@UW
The Ribalet Lab - SeaFlow@UW
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2
Modeling cell populations measured by flow cytometry with covariates using sparse mixture of regressions
The ocean is filled with microscopic microalgae, called phytoplankton, which together are responsible for as much photosynthesis as all …
Sangwon Hyun
,
Mattias Cape
,
Francois Ribalet
,
Jacob Bien
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Interoperable vocabulary for marine microbial flow cytometry
The recent development of biological sensors has extended marine plankton studies from conducting laboratory bench work to in vivo and …
Melilotus Thyssen
,
Gérald Grégori
,
Véronique Créach
,
Soumaya Lahbib
,
Mathilde Dugenne
,
Hedy M. Aardema
,
Luis Felipe Artigas
,
Bangqin Huang
,
Aude Barani
,
Laureen Beaugeard
,
Amel Bellaaj-Zouari
,
Alfred Beran
,
Raffaella Casotti
,
Yol Del Amo
,
A
,
Michel Denis
,
George B.J. Dubelaar
,
Sonja Endres
,
Lumi Haraguchi
,
Bengt Karlson
,
Christophe Lambert
,
Arnaud Louchart
,
Dominique Marie
,
Gwenaëlle Moncoiffé
,
David Pecqueur
,
Francois Ribalet
,
Machteld Rijkeboer
,
Tina Silovic
,
Ricardo Silva
,
Sophie Marro
,
Heidi M. Sosik
,
Marc Sourisseau
,
Glen Tarran
,
Nicolas Van Oostende
,
Li Zhao
,
Shan Zheng
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Viruses affect picocyanobacterial abundance and biogeography in the North Pacific Ocean
The photosynthetic picocyanobacteria Prochlorococcus and Synechococcus are models for dissecting how ecological niches are defined by …
Michael. C. G. Carlson
,
Francois Ribalet
,
Ilia Maidanik
,
Bryndan P. Durham
,
Yotam Hulata
,
Sara Ferron
,
Julia Weissenbach
,
Nitzan Shamir
,
Svetlana Goldin
,
Nava Baran
,
B. B. Cael
,
David M. Karl
,
Angelicque E. White
,
E. Virginia Armbrust
,
Debbie Lindell
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A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series
The rates of cell growth, division, and carbon loss of microbial populations are key parameters for understanding how organisms …
Jann Paul Mattern
,
Kristof Glauninger
,
Gregory L. Britten
,
John R. Casey
,
Sangwon Hyun
,
Zhen Wu
,
E. Virginia Armbrust
,
Zaid Harchaoui
,
Francois Ribalet
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DOI
Trophic interactions with heterotrophic bacteria limit the range of Prochlorococcus
Prochlorococcus is the smallest and most abundant photosynthetic organism on Earth and is thought to be confined to low-latitude …
Chistopher Follett
,
Stephnie Dutkiewitz
,
Francois Ribalet
,
Emily Zakem
,
David Caron
,
E.Virgnia Armbrust
,
Michael J. Follow
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Particulate metabolites and transcripts reflect diel oscillations of microbial activity in the surface ocean
Light fuels photosynthesis and organic matter production by primary producers in the sunlit ocean. The quantity and quality of the …
Angela K. Boysen
,
Laura T. Carlson
,
Bryndan P. Durham
,
Ryan D. Groussman
,
Frank O. Aylward
,
Francois Ribalet
,
Katherine R. Heal
,
Angelicque E. White
,
Edward F. DeLong
,
E. Virginia Armbrust
,
Anitra E. Ingalls
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A kernel-based change detection method to map shifts in phytoplankton communities measured by flow cytometry
Automated, ship-board flow cytometers provide high-resolution maps of phytoplankton composition over large swaths of the world’s …
Corinne Jones
,
Sophie Clayton
,
Francois Ribalet
,
E. Virginia Armbrust
,
Zaid Harchaoui
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Marine community metabolomes carry fingerprints of phytoplankton community composition
Microscopic phytoplankton transform 100 million tons of inorganic carbon into thousands of different organic compounds each day. The …
Katherine R. Heal
,
Bryndan P. Durham
,
Angela K. Boysen
,
Laura T. Carlson
,
Wei Qin
,
Francois Ribalet
,
Angelicque E. White
,
Randelle Bundy
,
E. Virginia Armbrust
,
Anitra E. Ingalls
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Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities
The 24-h cycle of light and darkness governs daily rhythms of complex behaviors across all domains of life. Intracellular …
Sacha N. Coesel
,
B. Durham
,
R. Groussman
,
S. Hu
,
D. Caron
,
R. Morales
,
Francois Ribalet
,
E. Virginia Armbrust
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Diel oscillations in the feeding activity of heterotrophic and mixotrophic nanoplankton in the North Pacific Subtropical Gyre
Daily oscillations in photosynthetically active radiation strongly influence the timing of metabolic processes in picocyanobacteria, …
Paige E. Connell
,
Francois Ribalet
,
E.Virginia Armbrust
,
Angelicque White
,
David A. Caron
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